Moved file and changed some parameters

Doxyfile

@@ -58,7 +58,7 @@ PROJECT_LOGO           =
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = "D:\OneDrive\Repositories\Educational\Western Michigan University\ECE4810-Fall2020-SunseekerTelemetry\Documentation"
+OUTPUT_DIRECTORY       = Documentation
 
 # If the CREATE_SUBDIRS tag is set to YES then doxygen will create 4096 sub-
 # directories (in 2 levels) under the output directory of each output format and
@@ -864,7 +864,8 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = "D:\OneDrive\Repositories\Educational\Western Michigan University\ECE4810-Fall2020-SunseekerTelemetry\Software"
+INPUT                  = Hardware \
+                         Software
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -1061,7 +1062,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE =
+USE_MDFILE_AS_MAINPAGE = README.markdown
 
 #---------------------------------------------------------------------------
 # Configuration options related to source browsing
@@ -2336,7 +2337,7 @@ EXTERNAL_PAGES         = YES
 # powerful graphs.
 # The default value is: YES.
 
-CLASS_DIAGRAMS         = NO
+CLASS_DIAGRAMS         = YES
 
 # You can include diagrams made with dia in doxygen documentation. Doxygen will
 # then run dia to produce the diagram and insert it in the documentation. The
@@ -2358,7 +2359,7 @@ HIDE_UNDOC_RELATIONS   = YES
 # set to NO
 # The default value is: NO.
 
-HAVE_DOT               = YES
+HAVE_DOT               = NO
 
 # The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
 # to run in parallel. When set to 0 doxygen will base this on the number of